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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21507796_21508653_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21507796 - 21508653
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
TGGTGCTCAATA
Flanking Amino Acid:
IYLTRLLATKGTLQKFVDDL
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.7
40.1
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
81.1
0.7
0.9
80
32
Minor 5ss
37.1
-1.5
3.3
49.6
47
Minor BPS
51.4
0.04
2
64.21
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022758
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030262
21501126 - 21509636
8511