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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_21513302_21513416_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
21513302 - 21513416
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGCACTT
5'SS Class:
weak_major
3'SS Sequence:
TTCCCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAC
U12 Branch Point Sequence:
GGTCCCTTCAGA
Flanking Amino Acid:
EPPPWLYPSLRGNPGLRTEQ
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.6
0.16
1.2
55.1
43.7
Major BPS
64.2
0.35
1
60.7
37.6
Major PPT
82.5
0.73
0.7
77.1
24.9
Minor 5ss
36.7
-1.5
3.6
52.8
46.2
Minor BPS
49.4
-0
2.1
62.5
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021027
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042575
21512900 - 21513449
550