About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2160790_2161828_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2160790 - 2161828
Intron Length:
1039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTA
5'SS Class:
strong_major
3'SS Sequence:
TCATGCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTCCTTTATAT
Flanking Amino Acid:
IQKLKQQLVQMEREKVNLLT
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
83.9
27.1
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
77.5
0.62
0.9
73.6
36.8
Minor 5ss
35.6
-1.6
3.4
49
47.2
Minor BPS
63.3
0.5
1.7
82.79
38.2

Associated Gene:

Gene:
BICD2
Ensembl Gene ID:
ENSAPLG00000015296
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032594
2091527 - 2175391
83865
ENSAPLT00000022962
2091527 - 2176919
85393
ENSAPLT00000015949
2091527 - 2173803
82277
ENSAPLT00000041121
2091527 - 2173803
82277
ENSAPLT00000038274
2091527 - 2173803
82277