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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2164040_2173496_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2164040 - 2173496
Intron Length:
9457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTGCTAAAAAT
Flanking Amino Acid:
FSSLRAMFATRCDEYVTQLD
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.2
0.77
0.8
78.5
34.2
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
45.9
-0.2
2
68.24
42.6

Associated Gene:

Gene:
BICD2
Ensembl Gene ID:
ENSAPLG00000015296
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032594
2091527 - 2175391
83865
ENSAPLT00000022962
2091527 - 2176919
85393
ENSAPLT00000015949
2091527 - 2173803
82277
ENSAPLT00000041121
2091527 - 2173803
82277
ENSAPLT00000038274
2091527 - 2173803
82277