Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2173708_2176913_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2173708 - 2176913

Intron Length:

3206

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAAGTCAT

5'SS Class:

major

3'SS Sequence:

TTCCATTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTTTTTCTAATG

Flanking Amino Acid:

ASKAKSSNPSL*

Intron Amino Acid Position:

848

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

1.1

70.9

40.9

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

86.2

0.81

0.7

84.1

30.5

Minor 5ss

37.9

-1.4

3.1

51.1

45.2

Minor BPS

62.3

0.25

1.7

71.16

36.4

Associated Gene:

Gene:

BICD2

Ensembl Gene ID:

ENSAPLG00000015296

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022962

2091527 - 2176919

85393