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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2259568_2268446_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2259568 - 2268446
Intron Length:
8879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAACAAG
5'SS Class:
major
3'SS Sequence:
TCAGTGTACAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTATTTGTAACT
Flanking Amino Acid:
AEVPKLEYLDPQKLFNIANE
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
64.2
41.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
46.7
-0.1
1.7
49.3
42.9
Minor 5ss
40.5
-1.1
3
52.7
44.6
Minor BPS
63.3
0.49
2
83.9
37.2

Associated Gene:

Gene:
FGD3
Ensembl Gene ID:
ENSAPLG00000015568
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016274
2254478 - 2308011
53534