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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2281433_2283694_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2281433 - 2283694
Intron Length:
2262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGCCCGTC
5'SS Class:
weak_major
3'SS Sequence:
TCTGTACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTATTTAAAT
Flanking Amino Acid:
SSAQTRGSCWEKMHKLLEVY
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53
0.07
1.2
48.6
42.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.4
0.68
0.9
73.8
35.8
Minor 5ss
39.5
-1.2
3.6
49.3
47.2
Minor BPS
73.4
0.81
1.5
90.39
32.8

Associated Gene:

Gene:
FGD3
Ensembl Gene ID:
ENSAPLG00000015568
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016274
2254478 - 2308011
53534