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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2283842_2284394_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2283842 - 2284394
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
AACCCCTAAACT
Flanking Amino Acid:
GTAQDRYLFLFNSMVLYCVP
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
84.3
0.77
0.8
79.1
32.9
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
60.7
0.41
1.7
73.2
43.2

Associated Gene:

Gene:
FGD3
Ensembl Gene ID:
ENSAPLG00000015568
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016274
2254478 - 2308011
53534