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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2285041_2285423_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2285041 - 2285423
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTGTTTTAACA
Flanking Amino Acid:
GKKRSLELQARTEEEKREWI
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.5
40
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
84.2
0.77
0.9
81
35.4
Minor 5ss
43.2
-0.7
3.1
58.8
46.1
Minor BPS
75.7
0.8
1.2
82.25
33.1

Associated Gene:

Gene:
FGD3
Ensembl Gene ID:
ENSAPLG00000015568
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016274
2254478 - 2308011
53534