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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2299251_2302185_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2299251 - 2302185
Intron Length:
2935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGTGCTAG
5'SS Class:
major
3'SS Sequence:
ATAGCGTCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAG
U12 Branch Point Sequence:
AGCTTATTAGCA
Flanking Amino Acid:
AEVWYLLRNFCSYLQFLEKG
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1
56.3
39.1
Major BPS
60.8
0.27
1.6
60.1
46.3
Major PPT
68
0.4
1
62.8
43.4
Minor 5ss
44
-0.7
2.8
51.3
46.9
Minor BPS
48.8
-0
1.8
59.42
40.2

Associated Gene:

Gene:
FGD3
Ensembl Gene ID:
ENSAPLG00000015568
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016274
2254478 - 2308011
53534