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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2302289_2307786_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2302289 - 2307786
Intron Length:
5498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
CTTCTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GGGTGTTTACAT
Flanking Amino Acid:
LVLYLQGITQDGRGPRPIPL
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
85.9
0.81
0.6
84.9
22.8
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
44.3
-0.3
2
58.22
44.7

Associated Gene:

Gene:
FGD3
Ensembl Gene ID:
ENSAPLG00000015568
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016274
2254478 - 2308011
53534