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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2314476_2342266_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2314476 - 2342266
Intron Length:
27791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TGCTCACTATTT
Flanking Amino Acid:
DINGKDSRTYSLSGWPYEIL
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
81.3
32.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
74.2
0.54
0.8
65
36.3
Minor 5ss
29
-2.4
3.2
40.6
45.6
Minor BPS
45.8
-0.2
2.1
66.65
44

Associated Gene:

Gene:
SUSD3
Ensembl Gene ID:
ENSAPLG00000015452
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016099
2314399 - 2382598
68200