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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2319587_2342266_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2319587 - 2342266
Intron Length:
22680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACTG
5'SS Class:
major
3'SS Sequence:
CCTGTCCTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TGCTCACTATTT
Flanking Amino Acid:
LCLPFSVTQTSLSGWPYEIL
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.4
45.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
74.2
0.54
0.8
65
36.3
Minor 5ss
34.2
-1.8
3.5
46.9
48.4
Minor BPS
45.8
-0.2
2.1
66.65
44

Associated Gene:

Gene:
SUSD3
Ensembl Gene ID:
ENSAPLG00000015452
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020740
2319501 - 2382598
63098