Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2362402_2366625_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2362402 - 2366625

Intron Length:

4224

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTACT

5'SS Class:

strong_major

3'SS Sequence:

TTTCGTTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTGCAT

U12 Branch Point Sequence:

TTGTGTTGCATT

Flanking Amino Acid:

AAGYLDKMLSGQCSRIFPPQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.9

86.4

28.9

Major BPS

57.3

0.18

1.6

71.4

45.1

Major PPT

86.1

0.81

0.8

80.9

31.1

Minor 5ss

38.4

-1.3

2.7

52.9

43.7

Minor BPS

-0.3

2.2

67.85

43.9

Associated Gene:

Gene:

SUSD3

Ensembl Gene ID:

ENSAPLG00000015452

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016097

2362344 - 2382598

20255