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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_236789_259643_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
236789 - 259643
Intron Length:
22855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTCTTAAAGC
Flanking Amino Acid:
PSTKSWNFRGKKRKQSTQDE
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
100
1.24
0.5
100
0
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
57.8
0.23
2
70.96
40.7

Associated Gene:

Gene:
ARHGEF3
Ensembl Gene ID:
ENSAPLG00000003091
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046834
193615 - 317293
123679
ENSAPLT00000042761
201438 - 317844
116407
ENSAPLT00000019189
193081 - 317844
124764