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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2368456_2371514_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2368456 - 2371514
Intron Length:
3059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTGTTTTACCC
Flanking Amino Acid:
VKKNERRRTERDMQLWYQLR
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75.9
35.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
78.5
0.64
0.9
72.3
36.8
Minor 5ss
39.6
-1.2
2.8
49.3
46.9
Minor BPS
54.6
0.12
1.7
65.82
40.4

Associated Gene:

Gene:
SUSD3
Ensembl Gene ID:
ENSAPLG00000015452
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022157
2349671 - 2382598
32928
ENSAPLT00000020740
2319501 - 2382598
63098
ENSAPLT00000016099
2314399 - 2382598
68200
ENSAPLT00000016097
2362344 - 2382598
20255