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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2388480_2397827_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2388480 - 2397827
Intron Length:
9348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
CTCTAAATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TTCTCCTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
65.3
40.8
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
69.1
0.43
0.9
61.7
37.5
Minor 5ss
34
-1.8
3.2
40.9
45.3
Minor BPS
89
1.3
0.9
95.75
31

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020030
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047661
2388032 - 2411365
23334