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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2388480_2399213_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2388480 - 2399213
Intron Length:
10734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
ATTTTATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTATTTTATT
Flanking Amino Acid:
MLYRTYQSYCQRLQH
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
65.3
40.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.7
0.67
0.8
78.5
34.3
Minor 5ss
34
-1.8
3.2
40.9
45.3
Minor BPS
57.2
0.31
1.8
77.49
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020030
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035727
2388464 - 2411365
22902