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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2393294_2399213_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2393294 - 2399213
Intron Length:
5920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGAAC
5'SS Class:
major
3'SS Sequence:
ATTTTATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTATTTTATT
Flanking Amino Acid:
MADQSYCQRLQH
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
69.5
36.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.7
0.67
0.8
78.5
34.3
Minor 5ss
27.6
-2.6
3
34.7
41.5
Minor BPS
57.2
0.31
1.8
77.49
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020030
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042856
2393176 - 2411365
18190