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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2396927_2397827_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
2396927 - 2397827
Intron Length:
901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGCTGTTT
5'SS Class:
weak_major
3'SS Sequence:
CTCTAAATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TTCTCCTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.3
0.22
1.1
59.9
41.2
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
69.1
0.43
0.9
61.7
37.5
Minor 5ss
36.7
-1.5
3.7
55.4
48.8
Minor BPS
89
1.3
0.9
95.75
31

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020030
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021919
2396813 - 2411365
14553