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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2397909_2399213_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2397909 - 2399213
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTGC
5'SS Class:
major
3'SS Sequence:
ATTTTATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTATTTTATT
Flanking Amino Acid:
MCFKQGEDQSYCQRLQH
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
57.8
42.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.7
0.67
0.8
78.5
34.3
Minor 5ss
36.1
-1.6
3.4
50.8
45.8
Minor BPS
57.2
0.31
1.8
77.49
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020030
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025820
2393176 - 2411365
18190
ENSAPLT00000021919
2396813 - 2411365
14553
ENSAPLT00000047661
2388032 - 2411365
23334
ENSAPLT00000045875
2397583 - 2411365
13783