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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2405790_2407966_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2405790 - 2407966
Intron Length:
2177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAATAAA
5'SS Class:
major
3'SS Sequence:
TCGTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
TCTGCCCTAATG
Flanking Amino Acid:
DMEKCMLNDRGPVFFLTCFS
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.5
34.2
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
80.2
0.68
0.8
73.6
37
Minor 5ss
34
-1.8
2.8
33.4
42
Minor BPS
56.5
0.07
1.9
63.6
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020030
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021919
2396813 - 2411365
14553
ENSAPLT00000045875
2397583 - 2411365
13783
ENSAPLT00000021793
2387565 - 2411365
23801
ENSAPLT00000042856
2393176 - 2411365
18190
ENSAPLT00000035727
2388464 - 2411365
22902
ENSAPLT00000025820
2393176 - 2411365
18190