About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2408039_2409718_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2408039 - 2409718
Intron Length:
1680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CCATCTTCATTT
Flanking Amino Acid:
FALFWYCSHSDTKVIGRARR
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
71.9
34
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79.7
0.67
0.9
77.9
35.9
Minor 5ss
37.1
-1.5
3.3
49.8
46.8
Minor BPS
47.4
-0.1
1.8
60.23
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020030
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021793
2387565 - 2411365
23801
ENSAPLT00000042856
2393176 - 2411365
18190
ENSAPLT00000020664
2387565 - 2411365
23801
ENSAPLT00000035727
2388464 - 2411365
22902
ENSAPLT00000025820
2393176 - 2411365
18190
ENSAPLT00000047661
2388032 - 2411365
23334
ENSAPLT00000021919
2396813 - 2411365
14553
ENSAPLT00000045875
2397583 - 2411365
13783