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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2426897_2426985_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2426897 - 2426985
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
CTTTGGAGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATGTTTTTATCA
Flanking Amino Acid:
KYDLNNPAKHEANGGVSVEA
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.4
44.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
68.8
0.42
1.1
62.1
43.2
Minor 5ss
43.4
-0.7
2.9
52.7
46.4
Minor BPS
60.7
0.33
1.6
68.7
38.2

Associated Gene:

Gene:
NINJ1
Ensembl Gene ID:
ENSAPLG00000029374
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026801
2421773 - 2439501
17729