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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2427019_2430284_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2427019 - 2430284
Intron Length:
3266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTGAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATATGCTTAAAA
Flanking Amino Acid:
VMVGVLLIFLVKYDLNNPAK
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.6
39.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
81.1
0.7
0.9
83
25.8
Minor 5ss
42.3
-0.8
2.5
51.2
40.6
Minor BPS
61.9
0.37
1.9
72.27
39.2

Associated Gene:

Gene:
NINJ1
Ensembl Gene ID:
ENSAPLG00000029374
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026801
2421773 - 2439501
17729
ENSAPLT00000016885
2424740 - 2432208
7469