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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2430520_2438982_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2430520 - 2438982
Intron Length:
8463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
CTCCCAATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
CCTCTCCCAATT
Flanking Amino Acid:
AEGAEPAAERHRPSQWFQRN
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
49
41.6
Major BPS
66.3
0.41
1
61
37.5
Major PPT
70
0.45
0.8
66.6
33
Minor 5ss
29.2
-2.4
3.4
30.7
42.7
Minor BPS
46
-0.2
1.8
61.67
42.7

Associated Gene:

Gene:
NINJ1
Ensembl Gene ID:
ENSAPLG00000029374
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026801
2421773 - 2439501
17729