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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2487397_2527287_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2487397 - 2527287
Intron Length:
39891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGGTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTCCATTTAATA
Flanking Amino Acid:
WVEVAWCELQDRKLTKVERQ
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
66.3
45.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.1
0.57
1
68.8
42.1
Minor 5ss
38.2
-1.3
3
48.4
47.3
Minor BPS
55.8
0.18
1.5
62.34
38

Associated Gene:

Gene:
WNK2
Ensembl Gene ID:
ENSAPLG00000012731
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030548
2486692 - 2602542
115851
ENSAPLT00000013263
2486779 - 2594944
108166
ENSAPLT00000030154
2486779 - 2602621
115843
ENSAPLT00000046246
2486779 - 2602621
115843
ENSAPLT00000028867
2486692 - 2602621
115930
ENSAPLT00000041747
2485545 - 2602621
117077
ENSAPLT00000030992
2485545 - 2594944
109400
ENSAPLT00000021663
2486692 - 2597153
110462