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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2543036_2545806_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2543036 - 2545806
Intron Length:
2771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAATAA
5'SS Class:
major
3'SS Sequence:
TCCTCCTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATGAT
U12 Branch Point Sequence:
TCTTGCTAAGTT
Flanking Amino Acid:
ETPDDVAQEMIDSGFFHEND
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
69
31.3
Major BPS
63.3
0.33
1.1
53.7
41.6
Major PPT
78
0.63
0.7
73.2
25
Minor 5ss
36.7
-1.5
3.1
43.7
45.9
Minor BPS
47.7
-0
2.3
71.08
46.5

Associated Gene:

Gene:
WNK2
Ensembl Gene ID:
ENSAPLG00000012731
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013263
2486779 - 2594944
108166
ENSAPLT00000030548
2486692 - 2602542
115851
ENSAPLT00000030154
2486779 - 2602621
115843
ENSAPLT00000046246
2486779 - 2602621
115843
ENSAPLT00000028867
2486692 - 2602621
115930
ENSAPLT00000041747
2485545 - 2602621
117077
ENSAPLT00000021663
2486692 - 2597153
110462
ENSAPLT00000030992
2485545 - 2594944
109400