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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2546096_2549102_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2546096 - 2549102
Intron Length:
3007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
GAGCCTGTAATA
Flanking Amino Acid:
NLPTSVTSVASDSTFDSGQG
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
87.7
0.85
0.7
85.4
28.6
Minor 5ss
41.2
-1
3.1
58.3
39.3
Minor BPS
47
-0.2
2
54.39
38.5

Associated Gene:

Gene:
WNK2
Ensembl Gene ID:
ENSAPLG00000012731
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030154
2486779 - 2602621
115843
ENSAPLT00000046246
2486779 - 2602621
115843
ENSAPLT00000028867
2486692 - 2602621
115930
ENSAPLT00000041747
2485545 - 2602621
117077
ENSAPLT00000021663
2486692 - 2597153
110462
ENSAPLT00000030992
2485545 - 2594944
109400
ENSAPLT00000013263
2486779 - 2594944
108166
ENSAPLT00000030548
2486692 - 2602542
115851