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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2562993_2565569_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2562993 - 2565569
Intron Length:
2577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCATAT
5'SS Class:
weak_major
3'SS Sequence:
TTCTCTTGCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTCTTGCAAA
Flanking Amino Acid:
KLQTLSQSCESYMSPDVASG
Intron Amino Acid Position:
1071

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.2
70.3
36.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
67.4
0.39
1.1
69.9
34.4
Minor 5ss
54.4
0.15
2.6
73.4
43.4
Minor BPS
48.2
-0.1
2
65.08
41.5

Associated Gene:

Gene:
WNK2
Ensembl Gene ID:
ENSAPLG00000012731
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030154
2486779 - 2602621
115843
ENSAPLT00000046246
2486779 - 2602621
115843
ENSAPLT00000028867
2486692 - 2602621
115930
ENSAPLT00000041747
2485545 - 2602621
117077
ENSAPLT00000021663
2486692 - 2597153
110462
ENSAPLT00000030992
2485545 - 2594944
109400
ENSAPLT00000013263
2486779 - 2594944
108166
ENSAPLT00000030548
2486692 - 2602542
115851