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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2565736_2565815_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2565736 - 2565815
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGGTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TCATTGTTAATC
Flanking Amino Acid:
SSRPKLTILNVCNTGDKMVE
Intron Amino Acid Position:
1127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.2
82.5
29.4
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
79.5
0.66
0.9
73
37.4
Minor 5ss
28.1
-2.5
3.7
39.4
38.9
Minor BPS
55.7
0.16
2
66.1
40.3

Associated Gene:

Gene:
WNK2
Ensembl Gene ID:
ENSAPLG00000012731
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030154
2486779 - 2602621
115843
ENSAPLT00000046246
2486779 - 2602621
115843
ENSAPLT00000028867
2486692 - 2602621
115930
ENSAPLT00000041747
2485545 - 2602621
117077
ENSAPLT00000021663
2486692 - 2597153
110462
ENSAPLT00000030992
2485545 - 2594944
109400
ENSAPLT00000013263
2486779 - 2594944
108166
ENSAPLT00000030548
2486692 - 2602542
115851