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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2572038_2573753_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2572038 - 2573753
Intron Length:
1716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCAG
5'SS Class:
major
3'SS Sequence:
ACTAATAAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCCCAACT
Flanking Amino Acid:
GVGPDSAEARGSAASIVPTP
Intron Amino Acid Position:
1658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
64.9
42.8
Major BPS
100
1.24
0.5
100
0
Major PPT
55.4
0.12
1.1
48.7
42.1
Minor 5ss
26.7
-2.7
2.9
30.9
43.2
Minor BPS
58.2
0.33
1.9
80.59
41.2

Associated Gene:

Gene:
WNK2
Ensembl Gene ID:
ENSAPLG00000012731
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030992
2485545 - 2594944
109400
ENSAPLT00000030548
2486692 - 2602542
115851
ENSAPLT00000028867
2486692 - 2602621
115930
ENSAPLT00000021663
2486692 - 2597153
110462
ENSAPLT00000041747
2485545 - 2602621
117077