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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2573810_2573886_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2573810 - 2573886
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ACTTTCAAAATT
Flanking Amino Acid:
PVAPAKGLLQVAPTSPSIAK
Intron Amino Acid Position:
1684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
75.5
40.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.3
0.86
0.7
81.5
36
Minor 5ss
42.8
-0.8
2.9
58
40.6
Minor BPS
49.7
0.06
1.9
70.34
41.3

Associated Gene:

Gene:
WNK2
Ensembl Gene ID:
ENSAPLG00000012731
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030154
2486779 - 2602621
115843
ENSAPLT00000046246
2486779 - 2602621
115843
ENSAPLT00000028867
2486692 - 2602621
115930
ENSAPLT00000041747
2485545 - 2602621
117077
ENSAPLT00000021663
2486692 - 2597153
110462
ENSAPLT00000030992
2485545 - 2594944
109400
ENSAPLT00000013263
2486779 - 2594944
108166
ENSAPLT00000030548
2486692 - 2602542
115851