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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2574585_2575814_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2574585 - 2575814
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTCGG
5'SS Class:
major
3'SS Sequence:
TTTTTATGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAATCTTTATTT
Flanking Amino Acid:
MKKELQNLREKHMKEIAELQ
Intron Amino Acid Position:
1916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
59
45.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.1
0.72
0.9
82.1
34.6
Minor 5ss
41.4
-1
2.8
49.7
40.9
Minor BPS
65.4
0.56
1.5
77.84
38.8

Associated Gene:

Gene:
WNK2
Ensembl Gene ID:
ENSAPLG00000012731
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021663
2486692 - 2597153
110462
ENSAPLT00000030992
2485545 - 2594944
109400
ENSAPLT00000013263
2486779 - 2594944
108166
ENSAPLT00000030548
2486692 - 2602542
115851
ENSAPLT00000030154
2486779 - 2602621
115843
ENSAPLT00000046246
2486779 - 2602621
115843
ENSAPLT00000028867
2486692 - 2602621
115930
ENSAPLT00000041747
2485545 - 2602621
117077