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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2576030_2578088_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2576030 - 2578088
Intron Length:
2059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTACA
5'SS Class:
major
3'SS Sequence:
TTTGTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTATAT
U12 Branch Point Sequence:
TGCTTCTATATT
Flanking Amino Acid:
QQLRSGTSSTSNLSDSKDSP
Intron Amino Acid Position:
1988

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
74.4
36
Major BPS
66.7
0.41
1.1
63.2
42.8
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
36.3
-1.5
3
43.1
38
Minor BPS
48.5
-0
2
67.56
43.7

Associated Gene:

Gene:
WNK2
Ensembl Gene ID:
ENSAPLG00000012731
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030548
2486692 - 2602542
115851
ENSAPLT00000021663
2486692 - 2597153
110462
ENSAPLT00000046246
2486779 - 2602621
115843
ENSAPLT00000013263
2486779 - 2594944
108166
ENSAPLT00000041747
2485545 - 2602621
117077
ENSAPLT00000030992
2485545 - 2594944
109400