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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2576030_2579226_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2576030 - 2579226
Intron Length:
3197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTACA
5'SS Class:
major
3'SS Sequence:
TATTCATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTCCCTTTATAT
Flanking Amino Acid:
QQLRSGTSSTSWTVFHQTSE
Intron Amino Acid Position:
1981

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
74.4
36
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83.8
0.76
0.8
77.9
35
Minor 5ss
36.3
-1.5
3
43.1
38
Minor BPS
56.5
0.28
1.7
74.45
42.4

Associated Gene:

Gene:
WNK2
Ensembl Gene ID:
ENSAPLG00000012731
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028867
2486692 - 2602621
115930