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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2579326_2584552_F

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2579326 - 2584552
Intron Length:
5227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTTTGTATT
5'SS Class:
weak_major
3'SS Sequence:
TTTTACCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
ATTGTTTTACCT
Flanking Amino Acid:
FLSGPVSLSIWSTLKRLCLG
Intron Amino Acid Position:
2086

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.3
0.2
1.3
68.9
41.2
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
83.3
0.75
0.7
78.3
30.1
Minor 5ss
47
-0.3
2.5
71.4
38.1
Minor BPS
59.1
0.36
1.7
77.06
40.2

Associated Gene:

Gene:
WNK2
Ensembl Gene ID:
ENSAPLG00000012731
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021663
2486692 - 2597153
110462
ENSAPLT00000030548
2486692 - 2602542
115851
ENSAPLT00000028867
2486692 - 2602621
115930