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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2584598_2586124_F

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2584598 - 2586124
Intron Length:
1527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAACTATC
5'SS Class:
weak_major
3'SS Sequence:
TGTGATTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
CCATTGTCAACT
Flanking Amino Acid:
RLCLGKDHSSRSSTNSLVTC
Intron Amino Acid Position:
2075

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
71.7
38.4
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
78.9
0.65
1
69.4
45.7
Minor 5ss
47.7
-0.2
2.6
65
33.8
Minor BPS
46.9
-0.1
2.2
64.08
46.3

Associated Gene:

Gene:
WNK2
Ensembl Gene ID:
ENSAPLG00000012731
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030548
2486692 - 2602542
115851
ENSAPLT00000028867
2486692 - 2602621
115930
ENSAPLT00000021663
2486692 - 2597153
110462
ENSAPLT00000013263
2486779 - 2594944
108166