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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2586379_2602513_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2586379 - 2602513
Intron Length:
16135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
CGGTCTGTGATC
Flanking Amino Acid:
PMQTQNETCGILKMRPPVTD
Intron Amino Acid Position:
2114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.1
65
40.7
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
89.5
0.89
0.7
88.9
28.2
Minor 5ss
34.3
-1.8
3.2
40.1
40
Minor BPS
46.2
-0.3
2
53.05
39.8

Associated Gene:

Gene:
WNK2
Ensembl Gene ID:
ENSAPLG00000012731
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030154
2486779 - 2602621
115843
ENSAPLT00000028867
2486692 - 2602621
115930
ENSAPLT00000046246
2486779 - 2602621
115843
ENSAPLT00000041747
2485545 - 2602621
117077