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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2596214_2596870_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
2596214 - 2596870
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TAATTCTGCATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
85.8
0.8
0.8
77.4
41.2
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
49.6
0.05
1.9
70.52
40.5

Associated Gene:

Gene:
WNK2
Ensembl Gene ID:
ENSAPLG00000012731
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021663
2486692 - 2597153
110462