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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_259707_302093_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
259707 - 302093
Intron Length:
42387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TCTGCCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TCTGCCTTTACA
Flanking Amino Acid:
TISICSLDTSEPSNKRVKPL
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
70.4
35.5
Major BPS
68
0.45
1
57.8
39
Major PPT
82.5
0.73
0.8
75.9
32.7
Minor 5ss
32.6
-2
2.7
37.5
40.1
Minor BPS
66.5
0.51
1.8
75.18
42.3

Associated Gene:

Gene:
ARHGEF3
Ensembl Gene ID:
ENSAPLG00000003091
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046834
193615 - 317293
123679
ENSAPLT00000042761
201438 - 317844
116407
ENSAPLT00000040149
249639 - 317529
67891
ENSAPLT00000019189
193081 - 317844
124764