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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2664048_2665437_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2664048 - 2665437
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AGCACTTTAATA
Flanking Amino Acid:
DNDEGNGGAVNHVSGNKIGW
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.4
0.71
0.9
77.9
36.6
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
62.1
0.38
1.3
62.98
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012933
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013514
2625543 - 2693380
67838