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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2665526_2668549_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2665526 - 2668549
Intron Length:
3024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
AGCACTTTATTT
Flanking Amino Acid:
TRGDLGDQTKAEGSSSASSG
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
34.7
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
78.1
0.63
0.9
72.7
37.6
Minor 5ss
42
-0.9
2.9
59.3
45.1
Minor BPS
50.3
0.09
1.6
63.44
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012933
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013514
2625543 - 2693380
67838