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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2756724_2761586_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2756724 - 2761586
Intron Length:
4863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CATTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGCAT
U12 Branch Point Sequence:
TACTGTCCAACA
Flanking Amino Acid:
NCEKTHGKSTLKKKRNWHKH
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
81.8
31
Major BPS
63.3
0.33
1.5
74
41.2
Major PPT
86.7
0.83
0.7
84.4
30
Minor 5ss
41.9
-0.9
2.8
57.3
41.2
Minor BPS
43.9
-0.4
2.1
57.23
42.2

Associated Gene:

Gene:
PHF2
Ensembl Gene ID:
ENSAPLG00000013367
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030792
2745357 - 2800486
55130
ENSAPLT00000026981
2705035 - 2800486
95452
ENSAPLT00000013981
2744173 - 2800486
56314
ENSAPLT00000036744
2705189 - 2801486
96298