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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2767202_2769635_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2767202 - 2769635
Intron Length:
2434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGCGTATG
5'SS Class:
major
3'SS Sequence:
AATTAATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTGAATT
Flanking Amino Acid:
FYVSDVENYVGPERSVDVTD
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
70.7
41
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.7
0.49
1
67.7
42.6
Minor 5ss
33
-1.9
3
38.5
41
Minor BPS
67
0.61
1.6
85.83
34

Associated Gene:

Gene:
PHF2
Ensembl Gene ID:
ENSAPLG00000013367
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034920
2760555 - 2800486
39932
ENSAPLT00000030792
2745357 - 2800486
55130
ENSAPLT00000026981
2705035 - 2800486
95452
ENSAPLT00000013981
2744173 - 2800486
56314
ENSAPLT00000036744
2705189 - 2801486
96298