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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2769778_2772510_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2769778 - 2772510
Intron Length:
2733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTAATT
Flanking Amino Acid:
NVTNLEFSDTRMSSFVEPPD
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.5
0.71
0.8
76.4
31.2
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
77.3
0.94
1
88.63
29.6

Associated Gene:

Gene:
PHF2
Ensembl Gene ID:
ENSAPLG00000013367
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034920
2760555 - 2800486
39932
ENSAPLT00000030792
2745357 - 2800486
55130
ENSAPLT00000026981
2705035 - 2800486
95452
ENSAPLT00000013981
2744173 - 2800486
56314
ENSAPLT00000036744
2705189 - 2801486
96298