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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2778336_2779656_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2778336 - 2779656
Intron Length:
1321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTACT
5'SS Class:
major
3'SS Sequence:
TGCCAAACTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
AATGCCTTACTA
Flanking Amino Acid:
DLAKEIRLSENASKASKADT
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
78.3
35.6
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
64.2
0.32
1
55
39
Minor 5ss
40.8
-1
2.4
53.1
43.6
Minor BPS
58.4
0.26
1.7
66.64
40.2

Associated Gene:

Gene:
PHF2
Ensembl Gene ID:
ENSAPLG00000013367
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034920
2760555 - 2800486
39932
ENSAPLT00000030792
2745357 - 2800486
55130
ENSAPLT00000026981
2705035 - 2800486
95452
ENSAPLT00000013981
2744173 - 2800486
56314
ENSAPLT00000036744
2705189 - 2801486
96298