About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2785501_2792783_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2785501 - 2792783
Intron Length:
7283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TATTTCTCAATG
Flanking Amino Acid:
EVGGLEYNTNSQPPASPSTQ
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
73.3
37.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
86.8
0.83
0.7
81.7
30.4
Minor 5ss
45.8
-0.4
2.5
58.4
45.9
Minor BPS
64.7
0.32
1.6
68.51
39.2

Associated Gene:

Gene:
PHF2
Ensembl Gene ID:
ENSAPLG00000013367
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034920
2760555 - 2800486
39932
ENSAPLT00000030792
2745357 - 2800486
55130
ENSAPLT00000026981
2705035 - 2800486
95452
ENSAPLT00000013981
2744173 - 2800486
56314
ENSAPLT00000036744
2705189 - 2801486
96298