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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2798175_2800397_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2798175 - 2800397
Intron Length:
2223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCAGGA
5'SS Class:
major
3'SS Sequence:
GCTCTCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
TGGGGCTCACCC
Flanking Amino Acid:
SSSQNNASAKGKRTKKGMAT
Intron Amino Acid Position:
1017

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
57.2
42.4
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
75.9
0.58
0.8
66
35.9
Minor 5ss
34.3
-1.8
3.5
47.9
47.5
Minor BPS
41.5
-0.6
2.2
50.79
46

Associated Gene:

Gene:
PHF2
Ensembl Gene ID:
ENSAPLG00000013367
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026981
2705035 - 2800486
95452
ENSAPLT00000036744
2705189 - 2801486
96298
ENSAPLT00000013981
2744173 - 2800486
56314
ENSAPLT00000034920
2760555 - 2800486
39932
ENSAPLT00000030792
2745357 - 2800486
55130