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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2848833_2849155_F

Intron Information:

Intron Rank:
126340
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2848833 - 2849155
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
CTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTGTTGCGG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGCATCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
42.1
-0.4
3.2
60.9
44.7
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
54.3
0.21
1.6
68.69
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018064
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019316
2848562 - 2849528
967